HTqPCR-package |
Analysis of High-Throughput qPCR data (HTqPCR) |
clusterCt |
Clustering of qPCR Ct values |
exprs,qPCRset-method |
Class "qPCRset" |
exprs<-,qPCRset,matrix-method |
Class "qPCRset" |
featureCategory |
Class "qPCRset" |
featureCategory<- |
Class "qPCRset" |
featureClass |
Class "qPCRset" |
featureClass<- |
Class "qPCRset" |
featureNames,qPCRset-method |
Class "qPCRset" |
featureNames<-,qPCRset,character-method |
Class "qPCRset" |
featurePos |
Class "qPCRset" |
featurePos<- |
Class "qPCRset" |
featureType |
Class "qPCRset" |
featureType<- |
Class "qPCRset" |
filterCategory |
Filter Ct values based on their feature categories. |
filterCtData |
Filter out features (genes) from qPCR data. |
flag |
Class "qPCRset" |
flag<- |
Class "qPCRset" |
heatmapSig |
Heatmap of deltadeltaCt values from qPCR data. |
HTqPCR |
Analysis of High-Throughput qPCR data (HTqPCR) |
limmaCtData |
Differentially expressed features with qPCR: limma |
n.samples |
Class "qPCRset" |
n.wells |
Class "qPCRset" |
normalizeCtData |
Normalization of Ct values from qPCR data. |
normalized |
Class "qPCRset" |
plotCtBoxes |
Boxplots for qPCR Ct values. |
plotCtCard |
Image plot of qPCR Ct values from a card format |
plotCtCategory |
Summarising the feature categories for Ct values. |
plotCtCor |
Correlation between Ct values from qPCR data |
plotCtDensity |
Distribution plot for qPCR Ct values. |
plotCtHeatmap |
Heatmap of qPCR Ct values. |
plotCtHistogram |
Histrogram of Ct values from qPCR experiments. |
plotCtLines |
Plotting Ct values from qPCR across multiple samples. |
plotCtOverview |
Overview plot of qPCR Ct values across multiple conditions. |
plotCtPairs |
Pairwise scatterplot of multiple sets of Ct values from qPCR data. |
plotCtPCA |
PCA for qPCR Ct values. |
plotCtReps |
Scatter plot of features analysed twice during each qPCR experiment. |
plotCtRQ |
Plot the relative quantification of Ct values from qPCR experiments. |
plotCtScatter |
Scatterplot of two sets of Ct values from qPCR data. |
plotCtSignificance |
Barplot with Ct values between genes from qPCR. |
plotCVBoxes |
Boxplots of CV for qPCR Ct values. |
qPCRpros |
Example processed qPCR data |
qPCRraw |
Example raw qPCR data. |
qPCRset-class |
Class "qPCRset" |
readCtData |
Reading Ct values from qPCR experiments data into a qPCRset |
sampleNames,qPCRset-method |
Class "qPCRset" |
sampleNames<-,qPCRset,character-method |
Class "qPCRset" |
setCategory |
Assign categories to Ct values from qPCR data. |
show,qPCRset-method |
Class "qPCRset" |
summary,qPCRset-method |
Class "qPCRset" |
ttestCtData |
Differentially expressed features with qPCR: t-test |
[,qPCRset-method |
Class "qPCRset" |