KCsmart-package |
KCsmart |
calcSpm |
KCsmart wrapper |
calcSpmCollection |
KCsmart Comparative wrapper |
compareSpmCollection |
KCsmart Comparative calculate null distribution |
compKc-class |
KC smart comparative |
compKcSigRegions-class |
KC smart comparative |
findSigLevelFdr |
This function has not been properly implemented yet |
findSigLevelTrad |
Find significance level |
getSigRegionsCompKC |
KCsmart Comparative calculate the signficant regions |
getSigSegments |
Retrieve the significantly gained and lost regions including the corresponding, original probes |
hsMirrorLocs |
Mirror locations of the human genome |
hsSampleData |
Homo Sapiens artificial cgh data set |
idPoints |
Identify points in sample point matrix plot |
initialize,compKc-method |
KC smart comparative |
initialize,KcghData-method |
Class "KcghData" |
initialize,KcghDataMirror-method |
Class "KcghDataMirror" |
initialize,KcghDataSplit-method |
Class "KcghDataSplit" |
initialize,KcghDataSum-method |
Class "KcghDataSum" |
initialize,probeAnnotation-method |
Class "probeAnnotation" |
KCData-class |
Internal class "KCData" |
KcghData-class |
Class "KcghData" |
KcghDataMirror-class |
Class "KcghDataMirror" |
KcghDataSplit-class |
Class "KcghDataSplit" |
KcghDataSum-class |
Class "KcghDataSum" |
KCsmart |
KCsmart |
length,KCData-method |
Internal class "KCData" |
mmMirrorLocs |
Mirror locations of the mouse genome |
plot |
Plot a sample point matrix |
plot,compKc,missing-method |
Plot a sample point matrix |
plot,compKc-method |
KC smart comparative |
plot,samplePointMatrix,missing-method |
Plot a sample point matrix |
plot,scaleSpace,missing-method |
Plot a sample point matrix |
plotScaleSpace |
Plot multiple significant regions in one figure |
probeAnnotation-class |
Class "probeAnnotation" |
samplePointMatrix-class |
Sample point matrix |
show,compKc-method |
KC smart comparative |
show,compKcSigRegions-method |
KC smart comparative |
show,samplePointMatrix-method |
Sample point matrix |
show,sigSegments-method |
Significant segments |
show,spmCollection-method |
Sample point matrix collection |
sigSegments-class |
Significant segments |
sort,KcghData,missing-method |
Class "KcghData" |
sort,KcghDataSum,missing-method |
Class "KcghDataSum" |
spmCollection-class |
Sample point matrix collection |
unlist,KCData-method |
Internal class "KCData" |
write.table |
Write summary of the significant regions to a table |
write.table,compKcSigRegions-method |
Write summary of the significant regions to a table |
write.table,sigSegments-method |
Write summary of the significant regions to a table |
[,probeAnnotation-method |
Class "probeAnnotation" |
[[,KCData-method |
Internal class "KCData" |
[[<-,KCData-method |
Internal class "KCData" |