RTools4TB_1.1.4-package |
The RTools4TB package: data mining of public microarray data through connections to the TranscriptomeBrowser database. |
annotationList |
The keywords used to get information about functional enrichment of transcriptional signatures. |
clusterEisen |
Performs system call to the Cluster 3.0 program. |
colorScale |
Calibration bar for color images |
createGraph4BioC |
Creates a graph based on a request to the TrancriptomeBrowser database. |
createSignatures4TB |
Creates a set of transcriptional signatures from a microarray dataset. |
DBF |
Density-Based Filtering. |
DBFMCL |
The "Density Based Filtering and Markov CLustering" algorithm (DBF-MCL). |
DBFMCLresult |
Class to store DBFMCL results. |
DBFMCLresult-class |
Class to store DBFMCL results. |
doNormalScore |
Normal score transformation of a matrix. |
doRankTransformation |
Rank transformation of a matrix. |
getData4DBFMCL |
Fetch an expression matrix from a file or an ExpressionSet object |
getExpressionMatrix |
A function to fetch an expression matrix from the TranscriptomeBrowser database. |
getSignatures |
A function to retrieve transcriptional signature IDs from the TranscriptomeBrowser database (TBrowserDB). |
getTBInfo |
Get information about an experiment or a platform. |
heatmapFromCDT |
Reads a "cdt" file containing a set of transcriptional signatures and produces heatmaps. |
matplotProfiles |
An internal plotting function based on the matplot function. |
MCL |
Invokes the Markov CLustering algorithm (MCL). |
plotGeneExpProfiles |
Visualization of transcriptional signature profiles. |
RTools4TB |
The RTools4TB package: data mining of public microarray data through connections to the TranscriptomeBrowser database. |
show,DBFMCLresult-method |
Class to store DBFMCL results. |
writeDBFMCLresult |
Writes the results of DBFMCL function onto disk. |