dyebias.application.subset | Return a subset of reporters that can be dye bias-corrected reasonably well |
dyebias.apply.correction | Perform dye bias correction using the GASSCO method |
dyebias.boxplot | Creates boxplots of the reporters with the strongest dye bias |
dyebias.estimate.iGSDBs | Estimate intrinsic gene specific dye biases (part of the GASSCO method) |
dyebias.maplot | Produce scatterplots of the hybridization, with strongest dye biases highlighted. |
dyebias.monotonicity | Calculate the degree of monotonicity of the dye bias across the slides. |
dyebias.monotonicityplot | Show the degree of monotonicity of the dye bias across the slides. |
dyebias.rgplot | Produce scatterplots of the hybridization, with strongest dye biases highlighted. |
dyebias.trendplot | Creates a trend-plot of all reporters, binned by dye bias, with all slides ordered by slide bias. |