Tools for extracting information from a FlowJo workspace and working with the data in the flowCore paradigm.


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Documentation for package ‘flowFlowJo’ version 1.4.0

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flowFlowJo-package Turn FlowJo workspaces into flowCore compliant objects
collectSummaryFlowInfo Collect Population Statistics on Flow Files
collectSummaryFlowInfo,flowJoList-method Collect Population Statistics on Flow Files
createFlowReport Produce a denormalized data frame of summary statistics and other information on a set of FlowJo gated FCS files
createFlowReport,fcsSummaryList-method Produce a denormalized data frame of summary statistics and other information on a set of FlowJo gated FCS files
fcsSummary-class Collect Population Statistics on Flow Files
fcsSummaryList-class Collect Population Statistics on Flow Files
flowFlowJo Turn FlowJo workspaces into flowCore compliant objects
flowJoCompensate Compensate flow cytometry data the same way as FlowJo does
flowJoCompensate,flowFrame,matrix-method Compensate flow cytometry data the same way as FlowJo does
flowJoCompensate,flowSet,matrix-method Compensate flow cytometry data the same way as FlowJo does
flowJoCompensate-methods Compensate flow cytometry data the same way as FlowJo does
flowJoList-class Parse one or more FlowJo workspaces
flowJoObj-class Parse one or more FlowJo workspaces
gateNodeToFilterObject Parse one or more FlowJo workspaces
gateNodeToFilterObject,XMLInternalElementNode-method Parse one or more FlowJo workspaces
gatherFlowJoGates Parse one or more FlowJo workspaces
gatherFlowJoGates,XMLInternalDocument-method Parse one or more FlowJo workspaces
gatherFlowJoTransformations Parse one or more FlowJo workspaces
gatherFlowJoTransformations,XMLInternalDocument-method Parse one or more FlowJo workspaces
getFlowJoCompMatrix Parse one or more FlowJo workspaces
getFlowJoCompMatrix,XMLInternalDocument-method Parse one or more FlowJo workspaces
getFlowJoGates getFlowJoGates
getFlowJoGates,flowJoList,character-method getFlowJoGates
getFlowJoGates,flowJoList-method getFlowJoGates
getFlowJoGates,flowJoObj,character-method getFlowJoGates
getFlowJoGates,flowJoObj-method getFlowJoGates
getFlowJoSummary Summarize FlowJo Workspaces
getFlowJoVersion Parse one or more FlowJo workspaces
getFlowJoVersion,XMLInternalDocument-method Parse one or more FlowJo workspaces
getWellId Parse one or more FlowJo workspaces
getWellId,flowFrame-method Parse one or more FlowJo workspaces
readFlowJoFile Parse one or more FlowJo workspaces
readFlowJoFile,character-method Parse one or more FlowJo workspaces
readFlowJoList Parse one or more FlowJo workspaces
simplifyGateNames Standardize flow cytometry gate names
simplifyGateNames,character-method Standardize flow cytometry gate names
simplifyGateNames,filter-method Standardize flow cytometry gate names