ACMECalcSet-class |
Class "ACMECalcSet" |
ACMESet-class |
Class "ACMESet" |
aGFF-class |
Class for storing GFF-like data |
aGFFCalc-class |
Class "aGFFCalc" |
chromosome |
Generics defined within ACME |
chromosome,ACMESet-method |
Class "ACMESet" |
cutpoints |
Generics defined within ACME |
cutpoints,ACMECalcSet-method |
Class "ACMECalcSet" |
do.aGFF.calc |
Perform ACME calculation |
end |
Generics defined within ACME |
end,ACMESet-method |
Class "ACMESet" |
example.agff |
An example ACME data structure of class ACMESet |
findClosestGene |
Find closest refseq gene |
findRegions |
Find all regions in data above p-value threshold |
getRefflat |
Get the refflat table from ucsc for the given genome |
plot |
Generics defined within ACME |
plot,ACMECalcSet-method |
Class "ACMECalcSet" |
plot,ACMESet-method |
Class "ACMESet" |
plot,aGFF-method |
Class for storing GFF-like data |
plot,aGFFCalc-method |
Class "aGFFCalc" |
print,aGFF-method |
Class for storing GFF-like data |
print,aGFFCalc-method |
Class "aGFFCalc" |
read.resultsGFF |
Read Nimblegen GFF files |
show,ACMECalcSet-method |
Class "ACMECalcSet" |
show,aGFF-method |
Class for storing GFF-like data |
show,aGFFCalc-method |
Class "aGFFCalc" |
start |
Generics defined within ACME |
start,ACMESet-method |
Class "ACMESet" |
threshold |
Generics defined within ACME |
threshold,ACMECalcSet-method |
Class "ACMECalcSet" |
vals |
Generics defined within ACME |
vals,ACMECalcSet-method |
Class "ACMECalcSet" |
write.sgr |
Write Affy IGB .sgr format files |