Easy extraction of individual probes in Affymetrix tiling arrays


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Documentation for package ‘AffyTiling’ version 1.4.0

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AnalyzeTilingCelFiles Background correction and RNA normalization for CEL files from an Affymetrix tiling array.
AssociateWithGenes Associates a vector of probe positions with the nearest input transcription start site.
AssociateWithInterval Returns index of association between a probe and a set of genomic intervals.
Einter Sample intensities for human promoter tiling array.
gene positions Position of known genes in the first 2 Mb of human chromosome 1-3.
intensities Sample intensities for human promoter tiling array.
KG Position of known genes in the first 2 Mb of human chromosome 1-3.
parseBPMAP Returns information from a BPMAP file for select probes in an Affymetrix tiling array.
TilingCelFiles2Probesets Background correction and RNA normalization for CEL files from an Affymetrix tiling array.