CNSeg |
Class "CNSeg" contains the output of DNACopy segmentation data
that can be operated on by the associated methods |
CNSeg-class |
Class "CNSeg" contains the output of DNACopy segmentation data
that can be operated on by the associated methods |
diffBy |
A filter that filters out features that do not differ by a set threshold between a pair of samples |
diffBy,ANY-method |
A filter that filters out features that do not differ by a set threshold between a pair of samples |
diffBy,RS-method |
A filter that filters out features that do not differ by a set threshold between a pair of samples |
diffBy-method |
A filter that filters out features that do not differ by a set threshold between a pair of samples |
genefilter,RS-method |
~~ Methods for Function genefilter ~~ |
genefilter-methods |
~~ Methods for Function genefilter ~~ |
geneInfo |
method that convert segment data into reduced segment matrix |
getCor |
Method that extends the cor function of stats to handle reduced segment data |
getCor,ANY-method |
Method that extends the cor function of stats to handle reduced segment data |
getCor,RS-method |
Method that extends the cor function of stats to handle reduced segment data |
getCor-method |
Method that extends the cor function of stats to handle reduced segment data |
getDist |
A method that extends the generic function dist to handle reduced segemnts |
getDist,ANY-method |
A method that extends the generic function dist to handle reduced segemnts |
getDist,RS-method |
A method that extends the generic function dist to handle reduced segemnts |
getDist-method |
A method that extends the generic function dist to handle reduced segemnts |
getRS |
method that convert segment data into reduced segment matrix |
getRS,CNSeg-method |
method that convert segment data into reduced segment matrix |
getRS-method |
method that convert segment data into reduced segment matrix |
madFilter |
Method that filters reduced segment matrix by the mean absolute deviation |
madFilter,ANY-method |
Method that filters reduced segment matrix by the mean absolute deviation |
madFilter,RS-method |
Method that filters reduced segment matrix by the mean absolute deviation |
madFilter-method |
Method that filters reduced segment matrix by the mean absolute deviation |
rs |
Class "RS" contains the Reduced Segment data matrix derived
from the output of segmentation |
rs,RS-method |
Class "RS" contains the Reduced Segment data matrix derived
from the output of segmentation |
RS-class |
Class "RS" contains the Reduced Segment data matrix derived
from the output of segmentation |
rs<- |
Class "RS" contains the Reduced Segment data matrix derived
from the output of segmentation |
rs<-,RS-method |
Class "RS" contains the Reduced Segment data matrix derived
from the output of segmentation |
sampleData |
Class "CNSeg" contains the output of DNACopy segmentation data
that can be operated on by the associated methods |
segBy |
Class "RS" contains the Reduced Segment data matrix derived
from the output of segmentation |
segBy,RS-method |
Class "RS" contains the Reduced Segment data matrix derived
from the output of segmentation |
segList |
Class "CNSeg" contains the output of DNACopy segmentation data
that can be operated on by the associated methods |
segList,CNSeg-method |
Class "CNSeg" contains the output of DNACopy segmentation data
that can be operated on by the associated methods |
segList-method |
Class "CNSeg" contains the output of DNACopy segmentation data
that can be operated on by the associated methods |
segList<- |
Class "CNSeg" contains the output of DNACopy segmentation data
that can be operated on by the associated methods |
segList<-,CNSeg-method |
Class "CNSeg" contains the output of DNACopy segmentation data
that can be operated on by the associated methods |
show,CNSeg-method |
Class "CNSeg" contains the output of DNACopy segmentation data
that can be operated on by the associated methods |
show,RS-method |
Class "RS" contains the Reduced Segment data matrix derived
from the output of segmentation |