ALLs.chr22 |
Chromosome 22 subset of ALL data for ALL1/AF4 and E2A/PBX1 |
annotation,ChrStrandData-method |
Class to contain data associated with chromosome coordinates across a
whole genome. |
chrdata |
The ALLs.chr22 ExpressionSet, reformatted as a ChrStrandData object |
chrHeatMap |
Plot ChrStrandMatrix objects as heat maps along a chromosome |
ChrMapPlot |
Class containing a mapping between plot location and probe identifier. |
ChrMapPlot-class |
Class containing a mapping between plot location and probe identifier. |
chrNames |
Retrieve chromosome names from an object. |
chrNames,ChrStrandData-method |
Class to contain data associated with chromosome coordinates across a
whole genome. |
chrNames,ChrStrandMatrix-method |
Class to contain data associated with genome locations for a specific chromosome. |
ChrStrandData |
Class to contain data associated with chromosome coordinates across a
whole genome. |
ChrStrandData-class |
Class to contain data associated with chromosome coordinates across a
whole genome. |
ChrStrandMatrix |
Class to contain data associated with genome locations for a specific chromosome. |
ChrStrandMatrix-class |
Class to contain data associated with genome locations for a specific chromosome. |
class:ChrMapPlot |
Class containing a mapping between plot location and probe identifier. |
class:ChrStrandData |
Class to contain data associated with chromosome coordinates across a
whole genome. |
class:ChrStrandMatrix |
Class to contain data associated with genome locations for a specific chromosome. |
createChrMatrix |
Generate chromosome-based subset matrices from the mapped data
structures generated by makeChrStrandData |
cytobands |
Cytoband location information |
drawMapDendro |
Draw a heatmap and dendrogram for a strand-specific data matrix
generated by createChrMatrix |
exprs,ChrStrandMatrix-method |
Class to contain data associated with genome locations for a specific chromosome. |
featureNames,ChrStrandMatrix-method |
Class to contain data associated with genome locations for a specific chromosome. |
grabChrMapProbes |
Identify the probes plotted using plotChrMap |
makeChrStrandData |
Map a data matrix onto chromosome coordinates |
makeChrStrandData,ExpressionSet-method |
Map a data matrix onto chromosome coordinates |
makeChrStrandData,matrix-method |
Map a data matrix onto chromosome coordinates |
makeChrStrandData-methods |
Map a data matrix onto chromosome coordinates |
makeRangedDataList |
Plot expression data as tracks in the UCSC genome browser |
plotChrMap |
Plot data as an annotated heat map along a chromosome |
sampleNames,ChrStrandData-method |
Class to contain data associated with chromosome coordinates across a
whole genome. |
sampleNames,ChrStrandMatrix-method |
Class to contain data associated with genome locations for a specific chromosome. |
show,ChrMapPlot-method |
Class containing a mapping between plot location and probe identifier. |
show,ChrStrandData-method |
Class to contain data associated with chromosome coordinates across a
whole genome. |
show,ChrStrandMatrix-method |
Class to contain data associated with genome locations for a specific chromosome. |
stains |
Cytoband display information |
strandName |
Retrieve strand information from a ChrStrandMatrix object. |
strandName,ChrStrandMatrix-method |
Class to contain data associated with genome locations for a specific chromosome. |
summary,ChrMapPlot-method |
Class containing a mapping between plot location and probe identifier. |
summary,ChrStrandData-method |
Class to contain data associated with chromosome coordinates across a
whole genome. |
summary,ChrStrandMatrix-method |
Class to contain data associated with genome locations for a specific chromosome. |