DFP-package | DFP Package Overview |
calculateDiscriminantFuzzyPattern | Calculates the Discriminant Fuzzy Pattern to select significative genes |
calculateFuzzyPatterns | Calculates a Fuzzy Pattern for each category of the samples |
calculateMembershipFunctions | Calculates Membership Functions |
computeMembership,HighExpressionLevel-method | Class "HighExpressionLevel" |
computeMembership,LowExpressionLevel-method | Class "LowExpressionLevel" |
computeMembership,MediumExpressionLevel-method | Class "MediumExpressionLevel" |
DFP | DFP Package Overview |
discretizeExpressionValues | Function to discretize gene expression data |
discriminantFuzzyPattern | Discriminant Fuzzy Pattern to filter genes |
ExpressionLevel-class | Class "ExpressionLevel" |
HighExpressionLevel-class | Class "HighExpressionLevel" |
LowExpressionLevel-class | Class "LowExpressionLevel" |
MediumExpressionLevel-class | Class "MediumExpressionLevel" |
plotDiscriminantFuzzyPattern | Plots the Discriminant Fuzzy Pattern of the relevant genes |
plotMembershipFunctions | Plots the Membership Functions (Low, Medium, High) used to discretize gene expression values |
readCSV | Creates an ExpressionSet with an AnnotatedDataFrame from CSV files |
rmadataset | A sample ExpressionSet object |
setValues,HighExpressionLevel-method | Class "HighExpressionLevel" |
setValues,LowExpressionLevel-method | Class "LowExpressionLevel" |
setValues,MediumExpressionLevel-method | Class "MediumExpressionLevel" |
show,ExpressionLevel-method | Class "ExpressionLevel" |
show-methods | Prints the slots (attributes) of an ExpressionLevel object |
showDiscreteValues | Prints the labels to which the algorithm converts the gene expression values |
showFuzzyPatterns | Plots the Fuzzy Patterns corresponding to a class |