GOstats-package |
Tools for manipulating GO and microarrays. |
Bdists |
Distance matrices for the BCR/ABL and NEG subgroups. |
combGOGraph |
Defunct Functions in GOstats Package |
compCorrGraph |
A function to compute a correlation based graph from Gene
Expression Data |
compGdist |
A function to compute the distance between pairs of nodes in a graph. |
condGeneIdUniverse,GOHyperGResult-method |
Class "GOHyperGResult" |
conditional,GOHyperGResult-method |
Class "GOHyperGResult" |
enumPairs |
Triad Functions |
expectedCounts,GOHyperGResult-method |
Class "GOHyperGResult" |
geneCounts,GOHyperGResult-method |
Class "GOHyperGResult" |
geneIdUniverse,GOHyperGResult-method |
Class "GOHyperGResult" |
getGoGraph |
Construct the GO graph given a set of leaves. |
getGoGraph,GOHyperGParams,character-method |
Construct the GO graph given a set of leaves. |
goDag |
Class "GOHyperGResult" |
goDag,GOHyperGResult-method |
Class "GOHyperGResult" |
GOGraph |
Construct the GO graph given a set of leaves. |
GOHyperG |
(DEPRECATED) Hypergeometric Tests for GO |
GOHyperGResult-class |
Class "GOHyperGResult" |
GOLeaves |
DEPRECATED Identify the leaves in a GO Graph |
GOstats |
Tools for manipulating GO and microarrays. |
GOstats-defunct |
Defunct Functions in GOstats Package |
htmlReport,GOHyperGResult-method |
Class "GOHyperGResult" |
hyperG2Affy |
Defunct Functions in GOstats Package |
hyperGtable |
Defunct Functions in GOstats Package |
hyperGTest |
Hypergeometric Tests for GO term association |
hyperGTest,GOHyperGParams-method |
Hypergeometric Tests for GO term association |
idx2dimnames |
Index to Dimnames |
inducedTermGraph |
Extraction and Plotting of GO Terms from a GOHyperGResult Object |
isConditional,GOHyperGResult-method |
Class "GOHyperGResult" |
isTriad |
Triad Functions |
makeGOGraph |
Construct a GO Graph |
Ndists |
Distance matrices for the BCR/ABL and NEG subgroups. |
notConn |
Find genes that are not connected to the others. |
oddsRatios,GOHyperGResult-method |
Class "GOHyperGResult" |
oneGOGraph |
Construct the GO graph given a set of leaves. |
plotGOTermGraph |
Extraction and Plotting of GO Terms from a GOHyperGResult Object |
probeSetSummary |
Summarize Probe Sets Associated with a hyperGTest Result |
pvalues,GOHyperGResult-method |
Class "GOHyperGResult" |
reduce2Degreek |
Triad Functions |
selectedGenes |
Class "GOHyperGResult" |
shortestPath |
Shortest Path Analysis |
simLL |
Functions to compute similarities between GO graphs and also
between Entrez Gene IDs based on their induced GO graphs. |
simLP |
Functions to compute similarities between GO graphs and also
between Entrez Gene IDs based on their induced GO graphs. |
simUI |
Functions to compute similarities between GO graphs and also
between Entrez Gene IDs based on their induced GO graphs. |
summary,GOHyperGResult-method |
Class "GOHyperGResult" |
termGraphs |
Extraction and Plotting of GO Terms from a GOHyperGResult Object |
triad |
Triad Functions |
triadCensus |
Triad Functions |