GeneAnswers-package |
Integrated Interpretation of Genes |
categoryNet |
Plot Category Links |
chartPlots |
Pie Chart and Bar Plots |
class:GeneAnswers |
Class GeneAnswers: contain and describe the relationship between given gene data and specified category |
DOLite |
Disease Ontology Annotation List |
DOLiteTerm |
Disease Ontology Annotation Vector |
geneAnnotationHeatmap |
Make a concept-gene cross tabulation |
GeneAnswers |
Integrated Interpretation of Genes |
GeneAnswers-class |
Class GeneAnswers: contain and describe the relationship between given gene data and specified category |
geneAnswersBuilder |
Build an object of a GeneAnswers class |
geneAnswersChartPlots |
Make pie chart and bar plot |
geneAnswersConceptNet |
Concept-Gene Networking Plotting |
geneAnswersConcepts |
Concept-Gene Networking Plotting |
geneAnswersHeatmap |
Generate Concept-Gene Tabulates |
geneAnswersHomoMapping |
Mapping homogenes for a GeneAnswers instance |
geneAnswersReadable |
Make GeneAnswers Instance readable |
geneAnswersSort |
Sort enrichmentInfo of a GeneAnswers instance |
geneConceptNet |
Generate Concept-gene network |
getAnnLib |
Class GeneAnswers: contain and describe the relationship between given gene data and specified category |
getAnnLib,GeneAnswers-method |
Class GeneAnswers: contain and describe the relationship between given gene data and specified category |
getCategoryList |
Retrieve categories containing given genes |
getCategoryTerms |
Convert Category IDs to Terms |
getCategoryType |
Class GeneAnswers: contain and describe the relationship between given gene data and specified category |
getCategoryType,GeneAnswers-method |
Class GeneAnswers: contain and describe the relationship between given gene data and specified category |
getDOLiteTerms |
Get DOLite Terms of Given DOLite IDs |
getEnrichmentInfo |
Class GeneAnswers: contain and describe the relationship between given gene data and specified category |
getEnrichmentInfo,GeneAnswers-method |
Class GeneAnswers: contain and describe the relationship between given gene data and specified category |
getGeneExprProfile |
Class GeneAnswers: contain and describe the relationship between given gene data and specified category |
getGeneExprProfile,GeneAnswers-method |
Class GeneAnswers: contain and describe the relationship between given gene data and specified category |
getGeneInput |
Class GeneAnswers: contain and describe the relationship between given gene data and specified category |
getGeneInput,GeneAnswers-method |
Class GeneAnswers: contain and describe the relationship between given gene data and specified category |
getGenesInCategory |
Class GeneAnswers: contain and describe the relationship between given gene data and specified category |
getGenesInCategory,GeneAnswers-method |
Class GeneAnswers: contain and describe the relationship between given gene data and specified category |
getGOList |
Get GO list of given genes |
getHomoGeneIDs |
Get homologous genes of given genes |
getPATHList |
Retrieve KEGG categories containing given genes |
getPATHTerms |
Get Pathway names of given KEGG IDs |
getPValueT |
Class GeneAnswers: contain and describe the relationship between given gene data and specified category |
getPValueT,GeneAnswers-method |
Class GeneAnswers: contain and describe the relationship between given gene data and specified category |
getSymbols |
Convert entrez gene IDs to gene symbols |
getTestType |
Class GeneAnswers: contain and describe the relationship between given gene data and specified category |
getTestType,GeneAnswers-method |
Class GeneAnswers: contain and describe the relationship between given gene data and specified category |
humanExpr |
Example human expression data |
humanGeneInput |
Example human gene data |
mouseExpr |
Example mouse expression data |
mouseGeneInput |
Example mouse gene data |
searchEntrez |
Search specified information from Entrez site |
setAnnLib |
Class GeneAnswers: contain and describe the relationship between given gene data and specified category |
setAnnLib,GeneAnswers-method |
Class GeneAnswers: contain and describe the relationship between given gene data and specified category |
setCategoryType |
Class GeneAnswers: contain and describe the relationship between given gene data and specified category |
setCategoryType,GeneAnswers-method |
Class GeneAnswers: contain and describe the relationship between given gene data and specified category |
setGeneExprProfile |
Class GeneAnswers: contain and describe the relationship between given gene data and specified category |
setGeneExprProfile,GeneAnswers-method |
Class GeneAnswers: contain and describe the relationship between given gene data and specified category |
setGeneInput |
Class GeneAnswers: contain and describe the relationship between given gene data and specified category |
setGeneInput,GeneAnswers-method |
Class GeneAnswers: contain and describe the relationship between given gene data and specified category |
setPValueT |
Class GeneAnswers: contain and describe the relationship between given gene data and specified category |
setPValueT,GeneAnswers-method |
Class GeneAnswers: contain and describe the relationship between given gene data and specified category |
setTestType |
Class GeneAnswers: contain and describe the relationship between given gene data and specified category |
setTestType,GeneAnswers-method |
Class GeneAnswers: contain and describe the relationship between given gene data and specified category |
show |
Class GeneAnswers: contain and describe the relationship between given gene data and specified category |
show,GeneAnswers-method |
Class GeneAnswers: contain and describe the relationship between given gene data and specified category |
summary |
Class GeneAnswers: contain and describe the relationship between given gene data and specified category |
summary,GeneAnswers-method |
Class GeneAnswers: contain and describe the relationship between given gene data and specified category |
topCategory |
Present top enrichment test information |
topCategoryGenes |
Present top enrichment test information with genes |
topDOLite |
Present top DOLite enrichment test information |
topDOLiteGenes |
Present top DOLite enrichment test information with genes |
topGO |
Present top GO enrichment test information |
topGOGenes |
Present top GO enrichment test information with genes |
topPATH |
Present top KEGG enrichment test information |
topPATHGenes |
Present top KEGG enrichment test information with genes |