getCategoryIndepKGMLurl |
Get KGML file (url) with KEGG PATHWAY ID and (optional) organism |
getComponent |
Class "KEGGGroup" |
getComponent,KEGGGroup-method |
Class "KEGGGroup" |
getComponent,KEGGNode-method |
Class "KEGGNode" |
getDisplayName |
Get a character string as label for display |
getDisplayName,graph-method |
Get a character string as label for display |
getDisplayName,KEGGNode-method |
Get a character string as label for display |
getDisplayName-methods |
Get a character string as label for display |
getEntryID |
Get entry ID for single or list of KEGGNode or KEGGedge object(s) |
getEntryID,KEGGEdge-method |
Get entry ID for single or list of KEGGNode or KEGGedge object(s) |
getEntryID,KEGGNode-method |
Get entry ID for single or list of KEGGNode or KEGGedge object(s) |
getEntryID,list-method |
Get entry ID for single or list of KEGGNode or KEGGedge object(s) |
getEntryID-methods |
Get entry ID for single or list of KEGGNode or KEGGedge object(s) |
getKEGGedgeData |
Get or set list of KEGG node or edge data |
getKEGGgeneLink |
Get KEGG gene link |
getKEGGgeneLink,character-method |
Get KEGG gene link |
getKEGGgeneLink-methods |
Get KEGG gene link |
getKEGGID |
Get KEGG ID |
getKEGGID,KEGGNode-method |
Get KEGG ID |
getKEGGID-methods |
Get KEGG ID |
getKEGGnodeData |
Get or set list of KEGG node or edge data |
getKGMLurl |
Get KGML file (url) with KEGG PATHWAY ID and (optional) organism |
getName |
Get 'name' attribute |
getName,KEGGEdge-method |
Class 'KEGGEdge' |
getName,KEGGEdgeSubType-method |
Class "KEGGEdgeSubType" |
getName,KEGGEdgeSubtype-method |
Get 'name' attribute |
getName,KEGGNode-method |
Get 'name' attribute |
getName,KEGGPathway-method |
Class "KEGGPathway" |
getName,KEGGPathwayInfo-method |
Get 'name' attribute |
getName,KEGGReaction-method |
Class "KEGGReaction" |
getName-methods |
Get 'name' attribute |
getNamedElement |
Extract the value in a vector by name |
getPathwayInfo |
Get KEGG pathway info |
getPathwayInfo,KEGGPathway-method |
Get KEGG pathway info |
getPathwayInfo-methods |
Get KEGG pathway info |
getProduct |
Class "KEGGReaction" |
getProduct,KEGGReaction-method |
Class "KEGGReaction" |
getReactions |
Get KEGG reactions |
getReactions,KEGGPathway-method |
Get KEGG reactions |
getReactions-methods |
Get KEGG reactions |
getRgraphvizEdgeNames |
Get Rgraphviz compatitable edge names |
getSubstrate |
Class "KEGGReaction" |
getSubstrate,KEGGReaction-method |
Class "KEGGReaction" |
getSubtype |
Get subtype |
getSubtype,graph-method |
Get subtype |
getSubtype,KEGGEdge-method |
Get subtype |
getSubtype-methods |
Get subtype |
getTitle |
Get title for given element |
getTitle,KEGGPathway-method |
Class "KEGGPathway" |
getTitle,KEGGPathwayInfo-method |
Class "KEGGPathwayInfo" |
getTitle-methods |
Get title for given element |
getType |
Get type attribute |
getType,KEGGEdge-method |
Get type attribute |
getType,KEGGNode-method |
Get type attribute |
getType,KEGGReaction-method |
Get type attribute |
getType-methods |
Get type attribute |
getValue |
Get 'value' attribute |
getValue,KEGGEdgeSubType-method |
Class "KEGGEdgeSubType" |
getValue,KEGGEdgeSubtype-method |
Get 'value' attribute |
getValue-methods |
Get 'value' attribute |
graphDensity |
Graph density |
setKEGGedgeData |
Get or set list of KEGG node or edge data |
setKEGGnodeData |
Get or set list of KEGG node or edge data |
show,KEGGEdge-method |
Class 'KEGGEdge' |
show,KEGGEdgeSubType-method |
Class "KEGGEdgeSubType" |
show,KEGGNode-method |
Class "KEGGNode" |
show,KEGGPathway-method |
Class "KEGGPathway" |
show,KEGGPathwayInfo-method |
Class "KEGGPathwayInfo" |
show,KEGGReaction-method |
Class "KEGGReaction" |
splitKEGGgroup |
Split KEGG group |
subGraphByNodeType |
Subset KEGG graph by node types |
subKEGGgraph |
Subset KEGG graph, including subsetting node and edge attributes |
subtypeDisplay |
Get display information for relation subtypes |
subtypeDisplay,graph-method |
Get display information for relation subtypes |
subtypeDisplay,KEGGEdge-method |
Get display information for relation subtypes |
subtypeDisplay,KEGGEdgeSubType-method |
Get display information for relation subtypes |
subtypeDisplay-methods |
Get display information for relation subtypes |