genediff |
Raw p-value calculation function |
GetLMObj |
Function to get a simple lm object for a regression on the relevant model. |
glog |
Generalized log transformation function |
jggrad2 |
Generating Jacobian-corrected data |
jglog |
Glog |
LMGene |
LMGene main function |
lnorm |
Lowess normalization function |
lnormeS |
Function to apply lowessnorm to a transformed expression set. Returns the normalized expression set. |
mlm2lm |
Linear Model converting function |
msa |
Relative mean square calculation function |
msecalc |
MSE calculation function |
msecalcmult |
MSE calculation function |
neweS |
Coercing to an ExpressionSet code |
norm |
Additive normalization function |
psmeans |
Function to take means of probesets. |
pvadjust |
P-value adjusting function |
rowaov |
Gene by gene ANOVA function |
rowlist |
Gene name listing function |
sample.eS |
Sample array data for LMGene |
sample.ind |
Sample probeset index vector |
sample.mat |
Sample array data for LMGene package |
tranest |
Glog transformation parameter estimation function |
tranest2 |
Glog transformation parameter estimation function 2 |
tranestmult |
Glog transformation parameter estimation function for multiple parameters |
transeS |
Function to apply the glog transform to an expression set. Returns the transformed expression set (not normalized). |
vlist |
Sample experimental data for LMGene package |