AMS |
Class "MEDMEset" |
AMS,MEDMEset-method |
Class "MEDMEset" |
CG |
Class "MEDMEset" |
CG,MEDMEset-method |
Class "MEDMEset" |
CGcount |
Determining the count of CpG dinucleotides for a set of genomic locations |
CGcounts |
Class "MEDMEset" |
chr |
Class "MEDMEset" |
chr,MEDMEset-method |
Class "MEDMEset" |
initialize,MEDMEset-method |
Class "MEDMEset" |
logR |
Class "MEDMEset" |
logR,MEDMEset-method |
Class "MEDMEset" |
MEDME |
Determining the logistic model of MeDIP enrichment in respect to the expected DNA methylation level |
MEDME.readFiles |
reading sgr or gff files for MEDME |
MEDME.writeFiles |
writeFiles sgr or gff files from MEDME output |
MEDMEset-class |
Class "MEDMEset" |
org |
Class "MEDMEset" |
org,MEDMEset-method |
Class "MEDMEset" |
organism |
Class "MEDMEset" |
pos |
Class "MEDMEset" |
pos,MEDMEset-method |
Class "MEDMEset" |
predict |
Applying the logistic model on MeDIP enrichment data |
RMS |
Class "MEDMEset" |
RMS,MEDMEset-method |
Class "MEDMEset" |
show,MEDMEset-method |
Class "MEDMEset" |
smooth |
Determining weighted MeDIP data |
smoothed |
Class "MEDMEset" |
smoothed,MEDMEset-method |
Class "MEDMEset" |
testMEDMEset |
Dataset of class MEDMEset for testing MEDME |
[,MEDMEset-method |
Class "MEDMEset" |