The ddCt Algorithm for the Analysis of Quantitative Real-Time PCR (qRT-PCR)


[Package List] [Top]

Documentation for package ‘ddCt’ version 1.0.0

User Guides and Package Vignettes

Read overview or browse directory.

Help Pages

$,SDMFrame-method Working with SDM files
barploterrbar Barplot with error bars.
coreData Working with SDM files
coreData,SDMFrame-method Working with SDM files
coreData<- Working with SDM files
coreData<-,SDMFrame,data.frame-method Working with SDM files
Ct ddCt Expression
Ct,ddCtExpression-method ddCt Expression
Ct,SDMFrame-method Working with SDM files
CtErr ddCt Expression
CtErr,ddCtExpression-method ddCt Expression
dCt ddCt Expression
dCt,ddCtExpression-method ddCt Expression
dCtErr ddCt Expression
dCtErr,ddCtExpression-method ddCt Expression
ddCt ddCt Expression
ddCt,ddCtExpression-method ddCt Expression
ddCtAbsolute absolute quantification for Taqman data
ddCtErr ddCt Expression
ddCtErr,ddCtExpression-method ddCt Expression
ddCtExpression Apply the ddCt algorithm for a given data set
ddCtExpression,SDMFrame-method Apply the ddCt algorithm for a given data set
ddCtExpression-class ddCt Expression
ddCtExpression-methods Apply the ddCt algorithm for a given data set
detectorNames Working with SDM files
detectorNames,SDMFrame-method Working with SDM files
detectorNames<- Working with SDM files
detectorNames<-,SDMFrame,character-method Working with SDM files
elist Write ddCtExpression object into data frame or files
elist,ddCtExpression-method ddCt Expression
elistWrite Write ddCtExpression object into data frame or files
elistWrite,ddCtExpression,character-method ddCt Expression
errBarchart Draw barchart of relative expression level with error-bars
errBarchart,ddCtExpression-method Draw barchart of relative expression level with error-bars
errBarchart-methods Draw barchart of relative expression level with error-bars
errBarchartParameter-class Class "errBarchartParameter"
exprsUndeterminedLabel,errBarchartParameter-method Class "errBarchartParameter"
fileNames Working with SDM files
fileNames,SDMFrame-method Working with SDM files
level ddCt Expression
level,ddCtExpression-method ddCt Expression
levelErr ddCt Expression
levelErr,ddCtExpression-method ddCt Expression
names,SDMFrame-method Working with SDM files
numberCt ddCt Expression
numberCt,ddCtExpression-method ddCt Expression
numberNA ddCt Expression
numberNA,ddCtExpression-method ddCt Expression
readSDM Read an SDM file
removeDetector Working with SDM files
removeDetector,SDMFrame,character-method Working with SDM files
removeDetector-methods Working with SDM files
removeSample Working with SDM files
removeSample,SDMFrame,character-method Working with SDM files
removeSample-methods Working with SDM files
replaceDetector Working with SDM files
replaceDetector,SDMFrame,character,character-method Working with SDM files
replaceDetector-methods Working with SDM files
replaceSample Working with SDM files
replaceSample,SDMFrame,character,character-method Working with SDM files
replaceSample-methods Working with SDM files
replaceVectorByEquality REPLACE ITEMS OF VECTOR BY EQUALITY
rightCensoring Working with SDM files
rightCensoring,SDMFrame,numeric-method Working with SDM files
sampleNames Working with SDM files
sampleNames,SDMFrame-method Working with SDM files
sampleNames<- Working with SDM files
sampleNames<-,SDMFrame,character-method Working with SDM files
SDMFrame Read an SDM file
SDMFrame-class Working with SDM files
show,errBarchartParameter-method Class "errBarchartParameter"
show,SDMFrame-method Working with SDM files
uniqueDetectorNames Working with SDM files
uniqueDetectorNames,SDMFrame-method Working with SDM files
uniqueDetectorNames<- Working with SDM files
uniqueDetectorNames<-,SDMFrame,character,character-method Working with SDM files
uniqueDetectorNames<-,SDMFrame,missing,character-method Working with SDM files
uniqueSampleNames Working with SDM files
uniqueSampleNames,SDMFrame-method Working with SDM files
uniqueSampleNames<- Working with SDM files
uniqueSampleNames<-,SDMFrame,character,character-method Working with SDM files
uniqueSampleNames<-,SDMFrame,missing,character-method Working with SDM files
write.htmltable Write a data frame into an html table within a html page
writeSimpleTabCsv Write a data frame into a tab delimited file
[,SDMFrame-method Working with SDM files
[[,SDMFrame-method Working with SDM files