Fingerprinting for Flow Cytometry


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Documentation for package ‘flowFP’ version 1.2.0

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flowFP-package Package overview
append,flowFPPlex,flowFP-method Methods to append flowFP fingerprints to a flowFPPlex
append,flowFPPlex,flowFPPlex-method Methods to append flowFP fingerprints to a flowFPPlex
append,flowFPPlex,list-method Methods to append flowFP fingerprints to a flowFPPlex
append-methods Methods to append flowFP fingerprints to a flowFPPlex
binBoundary Return bin boundaries for a flowFPModel
binBoundary,flowFP-method Return bin boundaries for a flowFPModel
binBoundary,flowFPModel-method Return bin boundaries for a flowFPModel
binBoundary-methods Return bin boundaries for a flowFPModel
counts Method for getting fingerprint data.
counts,flowFP-method Method for getting fingerprint data.
counts,flowFPPlex-method Method for getting fingerprint data.
flowFP Fingerprint constructor
flowFP-class Fingerprint class description.
flowFPModel Fingerprint model constructor
flowFPModel-class Fingerprint model class description.
flowFPPlex Fingerprint collection constructor.
flowFPPlex-class Fingerprint collection class description.
fs1 Example FCS flowSet
fs2 Example FCS flowSet
hasClasses Returns TRUE if the flowFP has a class factor for its instances
hasClasses,flowFP-method Returns TRUE if the flowFP has a class factor for its instances
hasClasses,flowFPPlex-method Returns TRUE if the flowFP has a class factor for its instances
hasClasses-methods Returns TRUE if the flowFP has a class factor for its instances
is.flowFP Test to see if object is a flowFP
is.flowFPModel Test to see if object is a flowFPModel
is.flowFPPlex Test to see if object is a flowFPPlex
length,flowFPPlex-method The number of fingerprints in a flowFPPlex
length-methods The number of fingerprints in a flowFPPlex
length<-,flowFPPlex,numeric-method The number of fingerprints in a flowFPPlex
name Get Model Name
name,flowFP-method Get Model Name
name,flowFPModel-method Get Model Name
name,flowFPPlex-method Get Model Name
name-methods Get Model Name
nFeatures Returns the number of features in an object.
nFeatures,flowFP-method Returns the number of features in an object.
nFeatures,flowFPModel-method Returns the number of features in an object.
nFeatures,flowFPPlex-method Returns the number of features in an object.
nFeatures-methods Returns the number of features in an object.
nInstances Returns the number of instances in an object.
nInstances,flowFP-method Returns the number of instances in an object.
nInstances,flowFPPlex-method Returns the number of instances in an object.
nInstances-methods Returns the number of instances in an object.
nRecursions Methods to set or get nRecursions
nRecursions,flowFP-method Methods to set or get nRecursions
nRecursions,flowFPModel-method Methods to set or get nRecursions
nRecursions,flowFPPlex-method Methods to set or get nRecursions
nRecursions-methods Methods to set or get nRecursions
nRecursions<- Methods to set or get nRecursions
nRecursions<-,flowFP,numeric-method Methods to set or get nRecursions
nRecursions<-,flowFPModel,numeric-method Methods to set or get nRecursions
parameters,flowFP-method Return the parameters considered for fingerprinting
parameters,flowFPModel-method Return the parameters considered for fingerprinting
parameters-methods Return the parameters considered for fingerprinting
plate 96 well plate data.
plot,flowFP,flowFrame-method Methods for visualizing flowFP objects
plot,flowFP,flowSet-method Methods for visualizing flowFP objects
plot,flowFP,missing-method Methods for visualizing flowFP objects
plot,flowFPModel,flowFrame-method Methods for visualizing flowFP objects
plot,flowFPModel,flowSet-method Methods for visualizing flowFP objects
plot,flowFPModel,missing-method Methods for visualizing flowFP objects
plot,flowFPPlex,missing-method Methods for visualizing flowFP objects
plot-methods Methods for visualizing flowFP objects
sampleClasses Gets/Sets the sample classes for a fingerprint.
sampleClasses,flowFP-method Gets/Sets the sample classes for a fingerprint.
sampleClasses,flowFPPlex-method Gets/Sets the sample classes for a fingerprint.
sampleClasses-methods Gets/Sets the sample classes for a fingerprint.
sampleClasses<- Gets/Sets the sample classes for a fingerprint.
sampleClasses<-,flowFP-method Gets/Sets the sample classes for a fingerprint.
sampleNames Methods to return sample names from a flowFP object.
sampleNames,flowFP-method Methods to return sample names from a flowFP object.
sampleNames,flowFPPlex-method Methods to return sample names from a flowFP object.
sampleNames-methods Methods to return sample names from a flowFP object.
show,flowFP-method Methods to view flowFP objects
show,flowFPModel-method Methods to view flowFP objects
show,flowFPPlex-method Methods to view flowFP objects
show-methods Methods to view flowFP objects
summary,flowFP-method Summerizes a flowFP object.
summary-methods Summerizes a flowFP object.
tags Returns tags from a flowFP object.
tags,flowFP-method Returns tags from a flowFP object.
tags-methods Returns tags from a flowFP object.
[,flowFP,character-method Indexing methods for flowFP and flowFPPlex
[,flowFP,numeric-method Indexing methods for flowFP and flowFPPlex
[,flowFPPlex,ANY-method Indexing methods for flowFP and flowFPPlex
[-methods Indexing methods for flowFP and flowFPPlex
[[,flowFPPlex,ANY-method Indexing methods for flowFP and flowFPPlex
[[-methods Indexing methods for flowFP and flowFPPlex
[[<-,flowFPPlex,numeric,ANY,flowFP-method Indexing methods for flowFP and flowFPPlex